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Hi! I'm Tina.
I'm a bioinformatician with a dual competence in biology and computer science. I completed my Master's of Bioinformatics and Modeling (BIM) at Sorbonne University in Paris. Then I worked in different companies where I was involved in various research projects.
In March 2022, I decided to continue my career as a self-employed entrepreneur and I established "Bioinfo-Computing" in the field of bioinformatics and development.
PROFESSIONAL EXPERIENCE
2018 - 2022, Paris, France
INSTITUT CURIE - Bioinformatics & NGS Plateform
Position: Bioinformatician
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Analysis of long reads with particular focus on PacBio data
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Analysis of transcriptomes via Iso-Seq
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Design and implementation of production analysis pipeline for NGS data (PacBio and Illumina)
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Benchmarking, monitoring and evaluation of new methods and tools to analysis PacBio data
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Familiarity with managing project-specific environments as Conda, Singularity
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Training over 60 biological researchers in Python, BioPython
2016 - 2018, Paris, France
Saint Louis Hospital - INSERM - GENOME and CANCER
Position: Bioinformatician
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Analysis of genomics expression (via RNA-seq)
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Install a bioinformatics web-based portal (Galaxy)
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Performance of statistical on data analysis
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Benchmarking, monitoring and evaluation of new methods and tools
2013 - 2016, Versailles, France
INRA - Research Unit in Genomics-Info
Position: Bioinformatician
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Study of transposable elements in the Genome
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Analysis of genomics expression (via RNA-seq)
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Performance of statistical on data analysis
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Benchmarking, monitoring and evaluation of new methods and tools.
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Familiarity with classical bioinformatics tools as Samtools, Cufflinks, Bowtie, Trinity, Grit…
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Modules of a pipeline (REPET), developed by the unit, and their integration into a bioinformatics web-based portal (Galaxy)
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A new parallel classification method on cluster
2012, April - Sep, Paris, France
Sorbonne University - CNRS - Laboratory of Computational and Quantitative Biology
Position: Master internalship (M2)
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Retrieve protein family from Pfam database.
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Analysis of data by "direct coupling analysis"
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Implementation of a classification algorithm for protein families
2006 - 2008, Tehran, Iran
Green Dataware Company
Position: Research and Development Engineer
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Analysing customer requirements (UML).
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Programming modules of a financial software and Enterprise Resource Planning (ERP).
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Customer Relationship Management (CRM) tool.
SCIENTIFIC ACTIVITIES
Publication in journal
Publication in journal
Baulande S, Delattre O, Alaeitabar T, et al. Protective effect of 1p36.22 Ewing Sarcoma association locus is conferred by an allele specific GGAA-microsatellite duplication leading to TARDBP overexpression. The American Society of Human Genetics. 2020. ePoster
Alaeitabar T, Francillonne N, Loaec M, Queneville H, Amselem J. Benchmarks for transcript assembly and differential gene expression (new isoforms) analysis in the context of transposable elements. Assemblée Générale de France Génomique. 2015. Paris, France.
Francillonne N, Alaeitabar T, Queneville H, Amselem J. A computational architecture designed for genome annotation: Oak genome sequencing project as a use case. JOBIM. 2015. Clermont-Ferrand, France
EDUCATION
2010 - 2012, Paris, France
M.S. Bioinformatics and Modeling (BIM-M1&M2)
Sorbonne university
2003 - 2006, Tehran, Iran